Global -> AWS Handlers

AWS API

tardis_em.utils.aws.get_benchmark_aws() → dict

Retrieve best benchmarking score for given NN type

Returns:

Dictionary with keys[network name] and values[list of scores]

Return type:

dict

tardis_em.utils.aws.put_benchmark_aws(data: dict, network: str | None = '', model=None) → bool

Upload new or update dictionary stored on S3

Parameters:

  • data (dict) – Dictionary with network the best metrics

  • network (Optional, str) – Benchmarking network name [e.g. fnet_32_microtubules_id].

  • model (Optional, str) – Optional dictionary to model.

Returns:

True if save correctly

Return type:

bool

tardis_em.utils.aws.get_model_aws(https: str)
tardis_em.utils.aws.get_weights_aws(network: str, subtype: str, model: str | None = None)

Module to download pre-train weights from S3 AWS bucket.

Model weight stored on S3 bucket with the naming convention network_subtype/model/model_weights.pth References.: - fnet_32/microtubules_3d/model_weights.pth - dist_triang/microtubules_3d/model_weights.pth

Weights are stored in ~/.tardis_em with the same convention and .txt file with file header information to identified update status for local file if the network connection can be established.

Parameters:

  • network (str) – Type of network for which weights are requested.

  • subtype (str) – Sub-name of the network or sub-parameter for the network.

  • model (str) – Additional dataset name used for the DIST.

tardis_em.utils.aws.aws_check_with_temp(model_name: list) → bool

Module to check aws up-to data status.

Quick check if local file if exist is up-to data with aws server.

Parameters:

model_name (list) – Name of the NN model.

Returns:

If True, local file is up-to-date.

Return type:

bool

tardis_em.utils.aws.aws_check_pkg_with_temp() → bool

Module to check aws up-to data status for OTA-Update.

Quick check if local pkg file exist and is up-to data with aws server.

Returns:

If True, local file is up-to-date.

Return type:

bool

Over-the-Air Update API

tardis_em.utils.ota_update.ota_update(status=False)
tardis_em.utils.ota_update.main()