.. include:: ../README.rst

.. toctree::
   :caption: Main:

   Start <README>
   History <HISTORY>


.. toctree::
   :caption: Usage:

   Installation <instructions>
   Tutorials <tutorials>
   -  3D Actin Prediction <usage/3d_actin>
   -  3D Microtubules Prediction <usage/3d_mt>
   -  2D Microtubules Prediction <usage/2d_mt>
   -  TIRF Microtubules Prediction <usage/tirf_mt>

   -  3D Membrane Prediction <usage/3d_membrane>
   -  2D Membrane Prediction <usage/2d_membrane>

   -  Scripting <usage/scripting>

   Visualization <usage/visualization>
   Fine-Tune TARDIS models <usage/fine_tune_model>
   Troubleshooting <usage/troubleshooting>
   TARDIS helper-functions <usage/helper>

.. toctree::
   :caption: Documentation:

   Code <code_doc>